diff --git a/tests/integration/run_tests.rs b/tests/integration/run_tests.rs
index e29ecc486c..549b88bac4 100644
--- a/tests/integration/run_tests.rs
+++ b/tests/integration/run_tests.rs
@@ -2899,37 +2899,6 @@ console.log(returnsHi());"#,
     .assert_exit_code(1);
 }
 
-// TODO(bartlomieju): temporary disabled
-// itest!(warn_on_deprecated_api {
-//   args: "run -A run/warn_on_deprecated_api/main.js",
-//   output: "run/warn_on_deprecated_api/main.out",
-//   http_server: true,
-//   exit_code: 0,
-// });
-
-// itest!(warn_on_deprecated_api_verbose {
-//   args: "run -A run/warn_on_deprecated_api/main.js",
-//   output: "run/warn_on_deprecated_api/main.verbose.out",
-//   envs: vec![("DENO_VERBOSE_WARNINGS".to_string(), "1".to_string())],
-//   http_server: true,
-//   exit_code: 0,
-// });
-
-// itest!(warn_on_deprecated_api_with_flag {
-//   args: "run -A --quiet run/warn_on_deprecated_api/main.js",
-//   output: "run/warn_on_deprecated_api/main_disabled_flag.out",
-//   http_server: true,
-//   exit_code: 0,
-// });
-
-// itest!(warn_on_deprecated_api_with_env_var {
-//   args: "run -A run/warn_on_deprecated_api/main.js",
-//   envs: vec![("DENO_NO_DEPRECATION_WARNINGS".to_string(), "1".to_string())],
-//   output: "run/warn_on_deprecated_api/main_disabled_env.out",
-//   http_server: true,
-//   exit_code: 0,
-// });
-
 #[test]
 fn deno_json_imports_expand() {
   let test_context = TestContextBuilder::for_npm().use_temp_cwd().build();
diff --git a/tests/testdata/run/warn_on_deprecated_api/main.js b/tests/testdata/run/warn_on_deprecated_api/main.js
deleted file mode 100644
index 8811df78de..0000000000
--- a/tests/testdata/run/warn_on_deprecated_api/main.js
+++ /dev/null
@@ -1,34 +0,0 @@
-import { runEcho as runEcho2 } from "http://localhost:4545/run/warn_on_deprecated_api/mod.ts";
-
-// @ts-ignore `Deno.run()` was soft-removed in Deno 2.
-const p = Deno.run({
-  cmd: [
-    Deno.execPath(),
-    "eval",
-    "console.log('hello world')",
-  ],
-});
-await p.status();
-p.close();
-
-async function runEcho() {
-  // @ts-ignore `Deno.run()` was soft-removed in Deno 2.
-  const p = Deno.run({
-    cmd: [
-      Deno.execPath(),
-      "eval",
-      "console.log('hello world')",
-    ],
-  });
-  await p.status();
-  p.close();
-}
-
-await runEcho();
-await runEcho();
-
-for (let i = 0; i < 10; i++) {
-  await runEcho();
-}
-
-await runEcho2();
diff --git a/tests/testdata/run/warn_on_deprecated_api/main.out b/tests/testdata/run/warn_on_deprecated_api/main.out
deleted file mode 100644
index ef85a6f99b..0000000000
--- a/tests/testdata/run/warn_on_deprecated_api/main.out
+++ /dev/null
@@ -1,15 +0,0 @@
-Download http://localhost:4545/run/warn_on_deprecated_api/mod.ts
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
diff --git a/tests/testdata/run/warn_on_deprecated_api/main.verbose.out b/tests/testdata/run/warn_on_deprecated_api/main.verbose.out
deleted file mode 100644
index e17562eef3..0000000000
--- a/tests/testdata/run/warn_on_deprecated_api/main.verbose.out
+++ /dev/null
@@ -1,60 +0,0 @@
-Download http://localhost:4545/run/warn_on_deprecated_api/mod.ts
-
-See the Deno 1 to 2 Migration Guide for more information at https://docs.deno.com/runtime/manual/advanced/migrate_deprecations
-
-Stack trace:
-  at [WILDCARD]warn_on_deprecated_api/main.js:3:16
-
-hint: Use "Deno.Command()" API instead.
-
-hello world
-
-See the Deno 1 to 2 Migration Guide for more information at https://docs.deno.com/runtime/manual/advanced/migrate_deprecations
-
-Stack trace:
-  at runEcho ([WILDCARD]warn_on_deprecated_api/main.js:14:18)
-  at [WILDCARD]warn_on_deprecated_api/main.js:25:7
-
-hint: Use "Deno.Command()" API instead.
-
-hello world
-
-See the Deno 1 to 2 Migration Guide for more information at https://docs.deno.com/runtime/manual/advanced/migrate_deprecations
-
-Stack trace:
-  at runEcho ([WILDCARD]warn_on_deprecated_api/main.js:14:18)
-  at [WILDCARD]warn_on_deprecated_api/main.js:26:7
-
-hint: Use "Deno.Command()" API instead.
-
-hello world
-
-See the Deno 1 to 2 Migration Guide for more information at https://docs.deno.com/runtime/manual/advanced/migrate_deprecations
-
-Stack trace:
-  at runEcho ([WILDCARD]warn_on_deprecated_api/main.js:14:18)
-  at [WILDCARD]warn_on_deprecated_api/main.js:29:9
-
-hint: Use "Deno.Command()" API instead.
-
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-
-See the Deno 1 to 2 Migration Guide for more information at https://docs.deno.com/runtime/manual/advanced/migrate_deprecations
-
-Stack trace:
-  at runEcho (http://localhost:4545/run/warn_on_deprecated_api/mod.ts:2:18)
-  at [WILDCARD]warn_on_deprecated_api/main.js:32:7
-
-hint: Use "Deno.Command()" API instead.
-hint: It appears this API is used by a remote dependency. Try upgrading to the latest version of that dependency.
-
-hello world
diff --git a/tests/testdata/run/warn_on_deprecated_api/main_disabled_env.out b/tests/testdata/run/warn_on_deprecated_api/main_disabled_env.out
deleted file mode 100644
index ef85a6f99b..0000000000
--- a/tests/testdata/run/warn_on_deprecated_api/main_disabled_env.out
+++ /dev/null
@@ -1,15 +0,0 @@
-Download http://localhost:4545/run/warn_on_deprecated_api/mod.ts
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
diff --git a/tests/testdata/run/warn_on_deprecated_api/main_disabled_flag.out b/tests/testdata/run/warn_on_deprecated_api/main_disabled_flag.out
deleted file mode 100644
index ce3755d166..0000000000
--- a/tests/testdata/run/warn_on_deprecated_api/main_disabled_flag.out
+++ /dev/null
@@ -1,14 +0,0 @@
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
-hello world
diff --git a/tests/testdata/run/warn_on_deprecated_api/mod.ts b/tests/testdata/run/warn_on_deprecated_api/mod.ts
deleted file mode 100644
index f74632b2cd..0000000000
--- a/tests/testdata/run/warn_on_deprecated_api/mod.ts
+++ /dev/null
@@ -1,11 +0,0 @@
-export async function runEcho() {
-  const p = Deno.run({
-    cmd: [
-      Deno.execPath(),
-      "eval",
-      "console.log('hello world')",
-    ],
-  });
-  await p.status();
-  p.close();
-}
diff --git a/tools/lint.js b/tools/lint.js
index cc595c2b13..21064a05bf 100755
--- a/tools/lint.js
+++ b/tools/lint.js
@@ -219,7 +219,7 @@ async function ensureNoNewITests() {
     "pm_tests.rs": 0,
     "publish_tests.rs": 0,
     "repl_tests.rs": 0,
-    "run_tests.rs": 24,
+    "run_tests.rs": 20,
     "shared_library_tests.rs": 0,
     "task_tests.rs": 2,
     "test_tests.rs": 0,