1. Stops `deno publish` using some custom include/exclude behaviour from
other sub commands
2. Takes ancestor directories into account when resolving gitignore
3. Backards compatible change that adds ability to unexclude an exclude
by using a negated glob at a more specific level for all sub commands
(see https://github.com/denoland/deno_config/pull/44).
This prevents documents specified in a deno.json's "exclude" from being
pre-loaded by the lsp.
For example, someone may have something like:
```jsonc
// deno.json
{
"exclude": [
"dist" // build directory
]
}
```
